PconsC - PconsC

PconsC Jan 28th, 2013 Motivation Recently, several new contact prediction methods have been published. They use large sets of multiple aligned

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Elofsson Lab Protein evolution. Protein structure predictions. Bioinformatics.

Reading instructions for oral exam. Reading material for Classical papers.

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TITLE

PconsC - PconsC

DESCRIPTION

PconsC Jan 28th, 2013 Motivation Recently, several new contact prediction methods have been published. They use large sets of multiple aligned

CONTENT

This site c.pcons.net states the following, "Combination of direct information methods and alignments improves contact prediction." Our analyzers noticed that the website said " Recently, several new contact prediction methods have been published." The Website also stated " They use large sets of multiple aligned sequences and assume that correlations between columns in these alignments can be the results of indirect interaction. We demonstrate that combining predictions from two prediction methods, PSICOV. And two alignment methods, HHblits. The source code for PconsC is freely available at http c."

MORE WEBSITES

c2.pcons.net Protein Residue-Residue Contact Prediction

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PconsD Ultra rapid MQAP

Ultra rapid, accurate model quality assessment for protein structure prediction. It relies on stream computing algorithms for distance matrix comparison and is implemented in Python and OpenCL. It is designed to work on GPUs and has been tested on nVIDA GTX 460 and 560 platforms. PconsD has been benchmarked in CASP10.